SANTA CLARA, Calif.--(BUSINESS WIRE)--Affymetrix, Inc., (Nasdaq:AFFX) today reported its operating results for the third quarter of 2006. On a GAAP basis the Company reported net loss of approximately $14.2 million or $0.21 per diluted share, including restructuring charges of $10.0 million or $0.15 per diluted share and stock-based compensation expense of $3.6 million or $0.05 per diluted share, in the third quarter of 2006, as compared to net income of $9.4 million or $0.14 per diluted share in the third quarter of 2005.