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Computational Scientist II - Genomics (MoCha)

Employer
Frederick National Laboratory for Cancer Research
Location
Frederick, MD
Start date
Jul 4, 2022

View more

Discipline
Science/R&D, Biotechnology, Genomics
Required Education
Bachelors Degree
Position Type
Full time
Hotbed
BioCapital

Job Details

Computational Scientist II - Genomics (MoCha)

Job ID: req2554
Employee Type: exempt full-time
Division: Clinical Research Program
Facility: Frederick: Ft Detrick
Location: PO Box B, Frederick, MD 21702 USA

The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research, Inc.  The lab addresses some of the most urgent and intractable problems in the biomedical sciences in cancer and AIDS, drug development and first-in-human clinical trials, applications of nanotechnology in medicine, and rapid response to emerging threats of infectious diseases.

Accountability, Compassion, Collaboration, Dedication, Integrity and Versatility; it's the FNL way.

PROGRAM DESCRIPTION         

The Molecular Characterization Laboratory (MoCha) is part of Leidos Biomedical Research’s Clinical Research Directorate (CRD) at the Frederick National Laboratory for Cancer Research. The MoCha Laboratory is responsible for providing high-level research in support of the NCI-Cancer Diagnostics Program (CDP) within the Division of Cancer Treatment and Diagnosis (DCTD). MoCha’s major activities include development and application of genomic assay platforms for use in DCTD-sponsored national clinical trials and preclinical studies.

KEY ROLES/RESPONSIBILITIES

We are seeking an enthusiastic, creative, and collaborative computational scientist to support computational and biological related questions in assigned projects/programs:

  •  Derive biological insight from single-cell RNA sequencing data and digital spatial transcriptomics data across a range of diseases, including clinical and preclinical model
  •  Develop, test, validate and maintain algorithms/tools for single-cell RNA sequencing data and digital spatial profiling data
  •  Analyze genomics data from quality control through generation of results, in collaboration with pathologists, biological scientists and NCI investigators
  •  Interact with PIs to define strategies for genomic data analysis including hypothesis generation and testing of predictive biomarkers of drug response
  • Provide biological interpretation of the genomic analysis to advance the understanding of cancer
  •  Supervise and collaborate with other bioinformatics team members to ensure the quality of work and the prioritization of projects to meet deadlines
  •  Be responsible for generating scientific opinions, identifying potential resources or constraints, and proposing strategies for exploiting available databases and program data generated at the molecular and cellular levels
  •  Interact extensively with intramural laboratories at the NIH and extramural scientists and present the findings to PIs

BASIC QUALIFICATIONS

To be considered for this position, you must minimally meet the knowledge, skills, and abilities listed below:

  • Possession of a Doctorate degree from an accredited college or university according to the Council for Higher Education Accreditation (CHEA) n biomedical science/bioinformatics/math/statistics/computer-related discipline. Foreign degrees must be evaluated for U.S. equivalency
  • In addition to education requirement, a minimum of two (2) years of progressively responsible scientific and/or complex system management/bioinformatics experience
  • Extensive experience in analysis of 10X Genomics single-cell RNAseq data and NanoString’s GeoMx Digital Spatial Profiler (DSP) data (including quality control, quantitation of gene expression, data modeling, and biological interpretation)
  • Expertise applying and developing statistical and machine learning approaches to address questions in biology, such as: regression, Bayesian modeling, random forests, ensemble methods, clustering, survival analysis, and dimensionality reduction
  • A solid understanding of biology (molecular, immunology, cancer or other disease) and prior experience collaborating with biologists and clinicians
  • Experience managing large datasets and computational tasks in a Linux-based high-performance computing environment and cloud environment
  • Proficiency with Bash, Python, Perl, R, MATLAB, C/C++, and/or JAVA and bioinformatics tools and database management
  • Strong computational/bioinformatics skills and demonstrated ability to work with scientists to deliver on objectives in defined timelines are required
  • Independence, self-motivation, innovation and ability to excel in a goal-oriented, multifaceted and fast-moving team environment are required
  • Experience and demonstrated success in a team-oriented environment and excellent communication skills (written and oral); ability to organize and execute multiple projects in parallel
  • Ability to obtain and maintain a security clearance
  • This position is essential to the success of MoCha and on-site presence in Frederick, MD and occasionally in Shady Grove (Rockville, MD) is required. 

    JOB HAZARDS

    • This position is subject to working with or have potential for exposure to infectious material, requiring medical clearance and immunizations

    Equal Opportunity Employer (EOE) | Minority/Female/Disabled/Veteran (M/F/D/V) | Drug Free Workplace (DFW)

    #readytowork

    Company

    A rewarding career with global impact

    Whether you’re an expert in your field or just starting out, we have a career opportunity for you. We’re always looking for people to join us in fulfilling the mission of the Frederick National Laboratory: discovery, innovation, and success in the biomedical sciences.

    Our team of 2,400+ scientists, technicians, administrators, and support staff work at the forefront of basic, translational, and preclinical science, with a focus on cancer, AIDS, and other infectious diseases.

    We collaborate with colleagues across the National Cancer Institute, National Institutes of Allergy and Infectious Diseases, and others throughout the National Institutes of Health. We also engage with extramural investigators in academia, government and industry.

    Your path to joining our team begins with the desire to work for the only national laboratory dedicated to biomedical research. Our employees share a common desire to help make a difference in cancer research and public health concerns. As you search for a career that fits your education, skills, and abilities, explore the core values that guide us and emphasize work-life balance.

    Discover why joining the Frederick National Laboratory team could be the most important career step you take

     

     

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    Company info
    Website
    Phone
    301-846-1000
    Location
    8560 Progress Drive
    Frederick
    MD
    21701
    US

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