Clinical Data Engineer

Location
Rockville, Maryland
Posted
Jun 16, 2022
Ref
2022-11786
Hotbed
BioCapital
Required Education
Masters Degree/MBA
Position Type
Full time

Medical Science & Computing, Inc. is searching for a Clinical Data Engineer with focus on Extract-Transform-Load (ETL) processes and business layer communications between software front-end and back-end. The ideal candidate will be comfortable working with varied clinical data using Python, and client APIs. The data engineer will develop solutions to be used alongside a highly customized LabKey environment at the National Institute of Allergy and Infectious Disease (NIAID) in the National Institutes of Health (NIH). This opportunity is a full-time position with MSC and it is on-site at NIH in Rockville, MD.

Duties & Responsibilities
  • The role will be responsible for developing and extending a clinical data repository and will entail:

    • Creating clinical data pipelines to import data from external systems via data staging servers and ETL processes
    • Understanding requirements for a clinical data repository and developing pipelines to transform, import, and export data from/to multiple sources
    • Architecting data structures to be amenable to user requirements
    • Using APIs provided by off-the-shelf products to generate reports or present data to user interfaces
    • Experiment with new technologies and systems and prototype solutions for potential integration into existing infrastructure
    • Working within the developer team to share knowledge, collaboratively developing best practices
    • Working with Stakeholders, Users, and Project Managers to meet NIH Project Goals and Milestones
    • Administering the LabKey and data staging systems, including management of deployments and configuration changes
    • Communicating and working within a multi-disciplinary team of developers, analysts, and scientific subject matter experts

#LI-SK1

 

Requirements

Position Qualifications

License/Certification/Education

Required

B.S. or higher in computer science or related field

 

Experience/Skills

Required

  • Experience with pipelines and biomedical data workflow management systems (such as airflow, LONI, others)
  • 3+ years of experience with Python development
  • Experience with Extract-Transform-Load of data in a bioinformatics, biomedical, or clinical field
  • 3+ years of experience working with APIs, integrating with external web services (REST, XML, JSON) or third-party tools
  • 2+ years of experience with Git and code deployments to multiple environments and involving contributions of multiple team members
  • Development of reports and dashboards through SQL queries
  • Demonstrated experience extending the functionality of existing software; ability to learn an existing body of code and extend it
  • Developing code in an agile development team, documenting code and tracking tasks
  • Experience with Linux/Unix shell scripting

 

Desired

 

  • Experience developing solutions for Laboratory Information Management Systems (LIMS)
  • Experience with biospecimen repositories such as BSI
  • Experience interacting with clinical data management systems and warehouses or REDCap
  • Experience communicating with end users on software development projects
  • Experience reviewing and editing PERL and Java
  • Understanding of the Software Development Lifecycle and exposure to Agile or iterative software design practices
  • Other duties as required
Company Description

Dovel Technologies and its Family of Companies (Medical Science & Computing and Ace Info Solutions) was acquired in October 2021.

 

Guidehouse is a leading global provider of consulting services to the public sector and commercial markets, with broad capabilities in management, technology, and risk consulting. By combining our public and private sector expertise, we help clients address their most complex challenges and navigate significant regulatory pressures focusing on transformational change, business resiliency, and technology-driven innovation. Across a range of advisory, consulting, outsourcing, and digital services, we create scalable, innovative solutions that help our clients outwit complexity and position them for future growth and success. The company has more than 12,000 professionals in over 50 locations globally. Guidehouse is a Veritas Capital portfolio company, led by seasoned professionals with proven and diverse expertise in traditional and emerging technologies, markets, and agenda-setting issues driving national and global economies.

 

Guidehouse is an Equal Employment Opportunity / Affirmative Action employer. All qualified applicants will receive consideration for employment without regard to race, color, national origin, ancestry, citizenship status, military status, protected veteran status, religion, creed, physical or mental disability, medical condition, marital status, sex, sexual orientation, gender, gender identity or expression, age, genetic information, or any other basis protected by law, ordinance, or regulation.

 

Guidehouse will consider for employment qualified applicants with criminal histories in a manner consistent with the requirements of applicable law or ordinance, including the Fair Chance Ordinance of Los Angeles and San Francisco.

 

If you have visited our website for information about employment opportunities or to apply for a position, and you require accommodation, please contact Guidehouse Recruiting at 1-571-633-1711 or via email at RecruitingAccommodation@guidehouse.com. All information you provide will be kept confidential and will be used only to the extent required to provide needed reasonable accommodation.

 

Guidehouse does not accept unsolicited resumes through or from search firms or staffing agencies. All unsolicited resumes will be considered the property of Guidehouse, and Guidehouse will not be obligated to pay a placement fee.