Genovis launches a new kit for mass spectrometry preparation of IgG - Mass Spec Kit - that contains both
the FabRICATOR® ( recombinant IdeS) and the IgGZERO™ (recombinant EndoS) enzymes. Using this kit
makes it possible to perform both deglycosylation and fragmentation of IgG. The kit processes 1 mg IgG in
one hour and the sample can be analyzed directly without further purification. By combining IgGZERO™
with FabRICATOR®, individual fragments of IgG can be studied in more detail with higher accuracy. In
addition, the amino acid sequencing for quality control of monoclonal antibodies is facilitated. These
unique enzymes have potential to reduce time and cost of quality control during screening, preparation
and production of monoclonal antibodies.
When performing mass spectrometry of large proteins, such as IgG molecules, there is often a need to remove
the glycans because of poor quality of the data otherwise obtained. Additionally, fragmentation of IgG can
visualize individual parts of IgG and allow for studies in more detail. The obvious solution is then to remove the
glycans attached to a Asp297 on the Fc part of IgG molecules and we have evaluated a novel endoglycosidase,
IgGZERO™, that selectively deglycosylates IgG molecules, for analysis in mass spectrometric applications. Due
to its high specificity and activity, complete deglycosylation of native IgG can be done in less than 30 minutes.
Deglycosylation followed by fragmentation with FabRICATOR®, which is very specific and effective, generates
F(ab’)2 and Fc fragment in less than 30 minutes. This reduces time of preparation significantly and
dramatically increase the quality of data obtained when IgG is analyzed by mass spectrometry.
Effect of deglycosylating IgG Fc:
Mass spectrometry of Fc-fragments from human polyclonal IgG purifed from plasma. (A) 1 mg of IgG was
incubated with 1000 U of FabRICATOR® for 30 minutes and analyzed by mass spectrometry. (B) 1 mg of human
IgG was incubated with 1000 Units of FabRICATOR® for 30 minutes followed by incubation with 1000 Units of
IgGZERO™ for 45 minutes and finally analyzed by mass spectrometry. Utilization of RPC18 LC-ESI-MS generated
a well-defined protein envelope with a deconvoluted mass of 24137 Da corresponding to the deglycosylated
IgG1 heavy chain cleaved at position Gly236.
Homogeneity of F(ab’)2 fragments Pepsin vs FabRICATOR:
Mass spectrometry (LS/MS) of F(ab’)2-fragments from humanized monoclonal IgG (Hercptin?). (A) 1 mg of IgG
was digested using Pepsin (Sigma) for 2 hours pH 3.5. F(ab’)2 fragments was isolated by size exclusion
chromatography before analyzis by mass spectrometry. (B) 1 mg of IgG was digested using FabRICATOR® for 30
minutes and F(ab’)2 fragments was isolated using size exclusion chromatography before analyzis by mass
spectrometry. FabRICATOR® has one unique cleavage site and generates identical fragments, whereas pepsin
generates several different fragments due to multiple cleavage sites resulting in a heterogeneous mixture of
Please contact Fredrik Olsson for additional information.
Phone: + 46 46 101233